Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 AC139713.2-201ENST00000641328 2723 ntBASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 AC097374.2-201ENST00000618617 1306 ntBASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.2■□□□□ 0.34
PTCHD3Q3KNS1 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 AC010460.3-201ENST00000511359 1579 ntBASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 AC246785.2-201ENST00000432512 513 ntBASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 KRT18P31-201ENST00000506277 1292 ntBASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 AC141586.5-201ENST00000624546 2050 ntBASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
PTCHD3Q3KNS1 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 NSUN5P1-202ENST00000421140 1535 ntBASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 NSUN5P2-203ENST00000457352 1529 ntBASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 IGHV3-47-201ENST00000425060 335 ntBASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 EMBP1-201ENST00000458200 901 ntBASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 AL138688.1-201ENST00000624851 1594 ntBASIC17.18■□□□□ 0.34
PTCHD3Q3KNS1 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms