Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC10.75□□□□□ -0.69
HSPG2P98160 GMCL1P1-201ENST00000463439 1581 ntBASIC10.75□□□□□ -0.69
HSPG2P98160 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC10.75□□□□□ -0.69
HSPG2P98160 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC10.75□□□□□ -0.69
HSPG2P98160 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC10.75□□□□□ -0.69
HSPG2P98160 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC10.75□□□□□ -0.69
HSPG2P98160 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC10.75□□□□□ -0.69
HSPG2P98160 AL161938.1-201ENST00000569833 2180 ntBASIC10.75□□□□□ -0.69
HSPG2P98160 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
HSPG2P98160 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC10.75□□□□□ -0.69
HSPG2P98160 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
HSPG2P98160 SPDYE18-201ENST00000510091 1050 ntBASIC10.75□□□□□ -0.69
HSPG2P98160 FAM8A2P-201ENST00000528813 1142 ntBASIC10.75□□□□□ -0.69
HSPG2P98160 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC10.75□□□□□ -0.69
HSPG2P98160 FLYWCH1P1-201ENST00000460917 1874 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
HSPG2P98160 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 AKAP8P1-201ENST00000434743 1349 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 FUZ-207ENST00000526575 482 ntTSL 4 BASIC10.74□□□□□ -0.69
HSPG2P98160 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC10.74□□□□□ -0.69
HSPG2P98160 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 ESPNP-201ENST00000270691 2015 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 RPF1-202ENST00000370656 724 ntTSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 HMGA1P7-201ENST00000406908 502 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 AP006294.1-201ENST00000415407 339 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 DFFBP1-201ENST00000433250 979 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC10.74□□□□□ -0.69
HSPG2P98160 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 RN7SL837P-201ENST00000463010 287 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 RN7SL752P-201ENST00000463779 287 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 AL109936.8-201ENST00000641772 604 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 AP3S2-216ENST00000617003 1561 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
HSPG2P98160 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
HSPG2P98160 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
HSPG2P98160 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
HSPG2P98160 HIST1H2BPS3-201ENST00000419683 341 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC10.74□□□□□ -0.69
HSPG2P98160 AL353779.1-201ENST00000434793 351 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 GNAQP1-201ENST00000444815 1067 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
HSPG2P98160 MIR6775-201ENST00000617557 69 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 CLDN5-201ENST00000403084 2357 ntBASIC10.74□□□□□ -0.69
HSPG2P98160 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
HSPG2P98160 MXI1-205ENST00000393134 889 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 ZNF767P-206ENST00000513792 565 ntBASIC10.73□□□□□ -0.69
HSPG2P98160 MFF-223ENST00000524634 647 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 NAT9-224ENST00000583757 583 ntTSL 3 BASIC10.73□□□□□ -0.69
HSPG2P98160 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
HSPG2P98160 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
HSPG2P98160 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC10.73□□□□□ -0.69
HSPG2P98160 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC10.73□□□□□ -0.69
HSPG2P98160 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC10.73□□□□□ -0.69
HSPG2P98160 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC10.73□□□□□ -0.69
HSPG2P98160 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC10.73□□□□□ -0.69
HSPG2P98160 RAB34-223ENST00000636154 730 ntTSL 2 BASIC10.73□□□□□ -0.69
HSPG2P98160 AC068587.10-201ENST00000641210 219 ntBASIC10.73□□□□□ -0.69
HSPG2P98160 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC10.73□□□□□ -0.69
HSPG2P98160 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC10.73□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms