Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
LMO4P61968 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.38□□□□□ -0.11
LMO4P61968 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
LMO4P61968 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LMO4P61968 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LMO4P61968 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 AC002310.6-201ENST00000624451 1377 ntBASIC14.37□□□□□ -0.11
LMO4P61968 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.37□□□□□ -0.11
LMO4P61968 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 AC046185.3-201ENST00000623228 1824 ntBASIC14.37□□□□□ -0.11
LMO4P61968 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
LMO4P61968 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC14.37□□□□□ -0.11
LMO4P61968 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LMO4P61968 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.37□□□□□ -0.11
LMO4P61968 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC14.37□□□□□ -0.11
LMO4P61968 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC14.37□□□□□ -0.11
LMO4P61968 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.37□□□□□ -0.11
LMO4P61968 LINC01451-201ENST00000623792 534 ntBASIC14.37□□□□□ -0.11
LMO4P61968 AC092865.6-201ENST00000642101 219 ntBASIC14.37□□□□□ -0.11
LMO4P61968 PODN-203ENST00000395871 2744 ntTSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LMO4P61968 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 AL590787.1-201ENST00000568856 1315 ntBASIC14.37□□□□□ -0.11
LMO4P61968 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC14.37□□□□□ -0.11
LMO4P61968 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC14.37□□□□□ -0.11
LMO4P61968 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LMO4P61968 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LMO4P61968 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
LMO4P61968 AL135999.2-201ENST00000622438 1686 ntBASIC14.36□□□□□ -0.11
LMO4P61968 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC14.36□□□□□ -0.11
LMO4P61968 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.36□□□□□ -0.11
LMO4P61968 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.36□□□□□ -0.11
LMO4P61968 IGLL3P-201ENST00000412472 434 ntBASIC14.36□□□□□ -0.11
LMO4P61968 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.36□□□□□ -0.11
LMO4P61968 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.36□□□□□ -0.11
LMO4P61968 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC14.36□□□□□ -0.11
LMO4P61968 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC14.36□□□□□ -0.11
LMO4P61968 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 AC018845.2-201ENST00000568326 409 ntBASIC14.36□□□□□ -0.11
LMO4P61968 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 AL139327.4-201ENST00000612362 153 ntBASIC14.36□□□□□ -0.11
LMO4P61968 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LMO4P61968 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LMO4P61968 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LMO4P61968 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
LMO4P61968 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
LMO4P61968 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.35□□□□□ -0.11
LMO4P61968 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms