Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.03■□□□□ 0.32
FOXA1P55317 AC046185.3-201ENST00000623228 1824 ntBASIC17.03■□□□□ 0.32
FOXA1P55317 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
FOXA1P55317 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 AK4P3-201ENST00000418260 669 ntBASIC17.02■□□□□ 0.32
FOXA1P55317 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 HOMER2P1-201ENST00000455653 964 ntBASIC17.02■□□□□ 0.32
FOXA1P55317 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXA1P55317 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.02■□□□□ 0.32
FOXA1P55317 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
FOXA1P55317 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
FOXA1P55317 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
FOXA1P55317 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
FOXA1P55317 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA1P55317 UBALD1-205ENST00000590891 2641 ntBASIC17.02■□□□□ 0.32
FOXA1P55317 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA1P55317 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA1P55317 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA1P55317 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
FOXA1P55317 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.02■□□□□ 0.31
FOXA1P55317 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.02■□□□□ 0.31
FOXA1P55317 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA1P55317 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA1P55317 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA1P55317 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 TNRC18P3-201ENST00000441896 2691 ntBASIC17.01■□□□□ 0.31
FOXA1P55317 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 SLC25A1P3-201ENST00000395415 828 ntBASIC17.01■□□□□ 0.31
FOXA1P55317 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA1P55317 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 AC083849.1-201ENST00000615227 514 ntBASIC17.01■□□□□ 0.31
FOXA1P55317 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA1P55317 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
FOXA1P55317 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17■□□□□ 0.31
FOXA1P55317 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17■□□□□ 0.31
FOXA1P55317 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
FOXA1P55317 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC17■□□□□ 0.31
FOXA1P55317 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17■□□□□ 0.31
FOXA1P55317 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
FOXA1P55317 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17■□□□□ 0.31
FOXA1P55317 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17■□□□□ 0.31
FOXA1P55317 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 TK1-204ENST00000590430 683 ntTSL 3 BASIC17■□□□□ 0.31
FOXA1P55317 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17■□□□□ 0.31
FOXA1P55317 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
FOXA1P55317 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA1P55317 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17■□□□□ 0.31
FOXA1P55317 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
FOXA1P55317 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA1P55317 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms