Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.73■□□□□ 0.27
NR1H2P55055 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.73■□□□□ 0.27
NR1H2P55055 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NR1H2P55055 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
NR1H2P55055 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC16.73■□□□□ 0.27
NR1H2P55055 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 BX664615.1-201ENST00000443558 458 ntBASIC16.72■□□□□ 0.27
NR1H2P55055 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 DUX4L26-201ENST00000489078 1255 ntBASIC16.72■□□□□ 0.27
NR1H2P55055 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 AC010203.1-204ENST00000548782 407 ntBASIC16.72■□□□□ 0.27
NR1H2P55055 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.72■□□□□ 0.27
NR1H2P55055 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.72■□□□□ 0.27
NR1H2P55055 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
NR1H2P55055 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.72■□□□□ 0.27
NR1H2P55055 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 AC026691.1-201ENST00000602502 2017 ntBASIC16.72■□□□□ 0.27
NR1H2P55055 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
NR1H2P55055 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC16.71■□□□□ 0.27
NR1H2P55055 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NR1H2P55055 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.71■□□□□ 0.27
NR1H2P55055 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.71■□□□□ 0.27
NR1H2P55055 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC16.71■□□□□ 0.27
NR1H2P55055 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.71■□□□□ 0.27
NR1H2P55055 TSPY17P-201ENST00000450329 467 ntBASIC16.71■□□□□ 0.27
NR1H2P55055 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.71■□□□□ 0.27
NR1H2P55055 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 FAM87A-204ENST00000613235 858 ntBASIC16.71■□□□□ 0.27
NR1H2P55055 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 MYLKP1-201ENST00000509077 1580 ntBASIC16.71■□□□□ 0.27
NR1H2P55055 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
NR1H2P55055 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
NR1H2P55055 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
NR1H2P55055 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
NR1H2P55055 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.26
NR1H2P55055 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
NR1H2P55055 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
NR1H2P55055 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
NR1H2P55055 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NR1H2P55055 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NR1H2P55055 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
NR1H2P55055 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
NR1H2P55055 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NR1H2P55055 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
NR1H2P55055 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
NR1H2P55055 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms