Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMK1P53667 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMK1P53667 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMK1P53667 SPDYE21P-201ENST00000413323 827 ntBASIC17.34■□□□□ 0.37
LIMK1P53667 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LIMK1P53667 AC007967.3-201ENST00000434308 558 ntBASIC17.34■□□□□ 0.37
LIMK1P53667 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LIMK1P53667 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMK1P53667 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.34■□□□□ 0.37
LIMK1P53667 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LIMK1P53667 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.34■□□□□ 0.37
LIMK1P53667 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.34■□□□□ 0.37
LIMK1P53667 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.34■□□□□ 0.37
LIMK1P53667 AC005498.2-205ENST00000593218 784 ntBASIC17.34■□□□□ 0.37
LIMK1P53667 KRT8P47-201ENST00000604727 1398 ntBASIC17.34■□□□□ 0.37
LIMK1P53667 AJ011932.1-201ENST00000621707 465 ntBASIC17.34■□□□□ 0.37
LIMK1P53667 AL513210.1-201ENST00000629608 234 ntBASIC17.34■□□□□ 0.37
LIMK1P53667 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LIMK1P53667 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
LIMK1P53667 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LIMK1P53667 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
LIMK1P53667 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.33■□□□□ 0.37
LIMK1P53667 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.33■□□□□ 0.37
LIMK1P53667 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.33■□□□□ 0.37
LIMK1P53667 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
LIMK1P53667 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMK1P53667 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMK1P53667 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 AC122714.2-201ENST00000502787 707 ntBASIC17.33■□□□□ 0.36
LIMK1P53667 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC17.33■□□□□ 0.36
LIMK1P53667 RNA5SP421-201ENST00000516864 134 ntBASIC17.33■□□□□ 0.36
LIMK1P53667 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMK1P53667 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 AC067852.2-201ENST00000590513 2313 ntBASIC17.33■□□□□ 0.36
LIMK1P53667 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMK1P53667 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
LIMK1P53667 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMK1P53667 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.33■□□□□ 0.36
LIMK1P53667 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
LIMK1P53667 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
LIMK1P53667 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMK1P53667 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 SDHAP2-201ENST00000455183 2001 ntBASIC17.32■□□□□ 0.36
LIMK1P53667 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMK1P53667 ELK2BP-201ENST00000415014 1224 ntBASIC17.32■□□□□ 0.36
LIMK1P53667 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.32■□□□□ 0.36
LIMK1P53667 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 SMN2-210ENST00000511812 867 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.32■□□□□ 0.36
LIMK1P53667 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
LIMK1P53667 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC17.32■□□□□ 0.36
LIMK1P53667 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.32■□□□□ 0.36
LIMK1P53667 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.32■□□□□ 0.36
LIMK1P53667 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms