Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
NEK3P51956 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC18.14■□□□□ 0.49
NEK3P51956 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC18.14■□□□□ 0.49
NEK3P51956 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
NEK3P51956 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.14■□□□□ 0.49
NEK3P51956 KRT18P65-201ENST00000439811 1286 ntBASIC18.14■□□□□ 0.49
NEK3P51956 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.14■□□□□ 0.49
NEK3P51956 AC068472.1-201ENST00000474589 881 ntBASIC18.14■□□□□ 0.49
NEK3P51956 KRT18P31-201ENST00000506277 1292 ntBASIC18.14■□□□□ 0.49
NEK3P51956 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.14■□□□□ 0.49
NEK3P51956 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.14■□□□□ 0.49
NEK3P51956 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.14■□□□□ 0.49
NEK3P51956 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.14■□□□□ 0.49
NEK3P51956 IFNL4P1-201ENST00000607083 540 ntBASIC18.14■□□□□ 0.49
NEK3P51956 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
NEK3P51956 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
NEK3P51956 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
NEK3P51956 AL023806.1-201ENST00000603994 1649 ntBASIC18.13■□□□□ 0.49
NEK3P51956 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 AD000864.1-201ENST00000624076 2295 ntBASIC18.13■□□□□ 0.49
NEK3P51956 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 AC004870.1-201ENST00000315132 882 ntBASIC18.13■□□□□ 0.49
NEK3P51956 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
NEK3P51956 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.13■□□□□ 0.49
NEK3P51956 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 RN7SL510P-201ENST00000581311 263 ntBASIC18.13■□□□□ 0.49
NEK3P51956 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.13■□□□□ 0.49
NEK3P51956 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.13■□□□□ 0.49
NEK3P51956 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.13■□□□□ 0.49
NEK3P51956 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
NEK3P51956 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.13■□□□□ 0.49
NEK3P51956 HTR7P1-202ENST00000624664 4411 ntBASIC18.13■□□□□ 0.49
NEK3P51956 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.13■□□□□ 0.49
NEK3P51956 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
NEK3P51956 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
NEK3P51956 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
NEK3P51956 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC18.12■□□□□ 0.49
NEK3P51956 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
NEK3P51956 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
NEK3P51956 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.12■□□□□ 0.49
NEK3P51956 MTCL1P1-201ENST00000446207 792 ntBASIC18.12■□□□□ 0.49
NEK3P51956 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.12■□□□□ 0.49
NEK3P51956 UNC93B7-201ENST00000509439 705 ntBASIC18.12■□□□□ 0.49
NEK3P51956 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.12■□□□□ 0.49
NEK3P51956 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.12■□□□□ 0.49
NEK3P51956 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
NEK3P51956 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
NEK3P51956 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC18.12■□□□□ 0.49
NEK3P51956 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.12■□□□□ 0.49
NEK3P51956 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms