Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.26■□□□□ 0.51
PTPN9P43378 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PTPN9P43378 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PTPN9P43378 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
PTPN9P43378 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.26■□□□□ 0.51
PTPN9P43378 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN9P43378 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.26■□□□□ 0.51
PTPN9P43378 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN9P43378 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PTPN9P43378 AL591684.3-201ENST00000605187 298 ntBASIC18.26■□□□□ 0.51
PTPN9P43378 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.26■□□□□ 0.51
PTPN9P43378 AC073592.5-201ENST00000624854 528 ntBASIC18.26■□□□□ 0.51
PTPN9P43378 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.26■□□□□ 0.51
PTPN9P43378 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTPN9P43378 AC046185.3-201ENST00000623228 1824 ntBASIC18.26■□□□□ 0.51
PTPN9P43378 AC009336.1-201ENST00000608941 1553 ntBASIC18.25■□□□□ 0.51
PTPN9P43378 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN9P43378 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PTPN9P43378 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.25■□□□□ 0.51
PTPN9P43378 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
PTPN9P43378 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
PTPN9P43378 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN9P43378 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.25■□□□□ 0.51
PTPN9P43378 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PTPN9P43378 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 ABCD1P5-201ENST00000445663 754 ntBASIC18.25■□□□□ 0.51
PTPN9P43378 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.25■□□□□ 0.51
PTPN9P43378 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.25■□□□□ 0.51
PTPN9P43378 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.25■□□□□ 0.51
PTPN9P43378 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.25■□□□□ 0.51
PTPN9P43378 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC18.25■□□□□ 0.51
PTPN9P43378 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PTPN9P43378 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.25■□□□□ 0.51
PTPN9P43378 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
PTPN9P43378 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTPN9P43378 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN9P43378 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
PTPN9P43378 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PTPN9P43378 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
PTPN9P43378 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.24■□□□□ 0.51
PTPN9P43378 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 RBSN-204ENST00000449050 903 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN9P43378 STK19B-204ENST00000512515 211 ntBASIC18.24■□□□□ 0.51
PTPN9P43378 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.24■□□□□ 0.51
PTPN9P43378 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.24■□□□□ 0.51
PTPN9P43378 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.24■□□□□ 0.51
PTPN9P43378 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.24■□□□□ 0.51
PTPN9P43378 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
PTPN9P43378 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PTPN9P43378 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.23■□□□□ 0.51
PTPN9P43378 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.23■□□□□ 0.51
PTPN9P43378 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
PTPN9P43378 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PTPN9P43378 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms