Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.24■□□□□ 0.35
SHMT2P34897 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.24■□□□□ 0.35
SHMT2P34897 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.24■□□□□ 0.35
SHMT2P34897 KRT18P31-201ENST00000506277 1292 ntBASIC17.24■□□□□ 0.35
SHMT2P34897 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.24■□□□□ 0.35
SHMT2P34897 AC111152.3-201ENST00000569699 673 ntBASIC17.24■□□□□ 0.35
SHMT2P34897 AC011467.2-201ENST00000598425 242 ntBASIC17.24■□□□□ 0.35
SHMT2P34897 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC17.24■□□□□ 0.35
SHMT2P34897 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.24■□□□□ 0.35
SHMT2P34897 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 AC100803.2-201ENST00000562459 1963 ntBASIC17.24■□□□□ 0.35
SHMT2P34897 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
SHMT2P34897 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
SHMT2P34897 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.24■□□□□ 0.35
SHMT2P34897 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
SHMT2P34897 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.23■□□□□ 0.35
SHMT2P34897 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
SHMT2P34897 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.23■□□□□ 0.35
SHMT2P34897 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.23■□□□□ 0.35
SHMT2P34897 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
SHMT2P34897 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 SLC25A6P5-201ENST00000435663 894 ntBASIC17.23■□□□□ 0.35
SHMT2P34897 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.23■□□□□ 0.35
SHMT2P34897 DDX43P3-201ENST00000441064 443 ntBASIC17.23■□□□□ 0.35
SHMT2P34897 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.23■□□□□ 0.35
SHMT2P34897 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.23■□□□□ 0.35
SHMT2P34897 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.23■□□□□ 0.35
SHMT2P34897 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17.23■□□□□ 0.35
SHMT2P34897 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC17.23■□□□□ 0.35
SHMT2P34897 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
SHMT2P34897 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 AL691432.3-201ENST00000621860 400 ntBASIC17.23■□□□□ 0.35
SHMT2P34897 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.23■□□□□ 0.35
SHMT2P34897 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
SHMT2P34897 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC17.23■□□□□ 0.35
SHMT2P34897 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
SHMT2P34897 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.22■□□□□ 0.35
SHMT2P34897 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.22■□□□□ 0.35
SHMT2P34897 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.22■□□□□ 0.35
SHMT2P34897 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 AC108860.2-201ENST00000562760 2183 ntBASIC17.22■□□□□ 0.35
SHMT2P34897 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.22■□□□□ 0.35
SHMT2P34897 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SHMT2P34897 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.22■□□□□ 0.35
SHMT2P34897 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SHMT2P34897 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms