Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM4SF1P30408 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM4SF1P30408 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
TM4SF1P30408 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM4SF1P30408 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.68■■□□□ 1.06
TM4SF1P30408 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
TM4SF1P30408 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 WIZP1-201ENST00000531444 2299 ntBASIC21.67■■□□□ 1.06
TM4SF1P30408 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 ENSA-206ENST00000361631 725 ntTSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 AC236430.1-201ENST00000402231 743 ntBASIC21.67■■□□□ 1.06
TM4SF1P30408 AC002472.2-201ENST00000442739 958 ntBASIC21.67■■□□□ 1.06
TM4SF1P30408 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 AC087163.2-201ENST00000457299 853 ntBASIC21.67■■□□□ 1.06
TM4SF1P30408 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 AP001059.3-201ENST00000619053 235 ntBASIC21.67■■□□□ 1.06
TM4SF1P30408 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.67■■□□□ 1.06
TM4SF1P30408 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TM4SF1P30408 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
TM4SF1P30408 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
TM4SF1P30408 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.66■■□□□ 1.06
TM4SF1P30408 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
TM4SF1P30408 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC21.66■■□□□ 1.06
TM4SF1P30408 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.66■■□□□ 1.06
TM4SF1P30408 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.66■■□□□ 1.06
TM4SF1P30408 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 AC005034.1-201ENST00000426657 489 ntBASIC21.66■■□□□ 1.06
TM4SF1P30408 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC21.66■■□□□ 1.06
TM4SF1P30408 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC21.66■■□□□ 1.06
TM4SF1P30408 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.66■■□□□ 1.06
TM4SF1P30408 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.66■■□□□ 1.06
TM4SF1P30408 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 AL135999.2-201ENST00000622438 1686 ntBASIC21.66■■□□□ 1.06
TM4SF1P30408 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
TM4SF1P30408 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
TM4SF1P30408 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
TM4SF1P30408 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.65■■□□□ 1.06
TM4SF1P30408 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
TM4SF1P30408 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 TUBB3P1-201ENST00000405796 1332 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 TFAMP1-201ENST00000412727 736 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.65■■□□□ 1.06
TM4SF1P30408 CNN2P2-201ENST00000443536 909 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 CNN2P3-201ENST00000450201 906 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 UGT1A2P-201ENST00000454886 866 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.65■■□□□ 1.06
TM4SF1P30408 HLA-J-202ENST00000469281 1241 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC21.65■■□□□ 1.06
TM4SF1P30408 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.65■■□□□ 1.06
TM4SF1P30408 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.65■■□□□ 1.06
TM4SF1P30408 AL136317.3-201ENST00000618497 906 ntBASIC21.65■■□□□ 1.06
TM4SF1P30408 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
TM4SF1P30408 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.65■■□□□ 1.06
TM4SF1P30408 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TM4SF1P30408 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC21.64■■□□□ 1.06
TM4SF1P30408 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
TM4SF1P30408 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.64■■□□□ 1.05
TM4SF1P30408 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
TM4SF1P30408 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.64■■□□□ 1.05
TM4SF1P30408 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
TM4SF1P30408 TSPY16P-201ENST00000449843 468 ntBASIC21.64■■□□□ 1.05
TM4SF1P30408 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms