Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH3P22223 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH3P22223 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
CDH3P22223 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH3P22223 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH3P22223 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH3P22223 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH3P22223 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH3P22223 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH3P22223 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH3P22223 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH3P22223 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH3P22223 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH3P22223 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.25■□□□□ 0.35
CDH3P22223 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC17.25■□□□□ 0.35
CDH3P22223 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CDH3P22223 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH3P22223 AL096828.2-201ENST00000567259 1965 ntBASIC17.25■□□□□ 0.35
CDH3P22223 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH3P22223 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 AL356309.3-201ENST00000624132 1934 ntBASIC17.25■□□□□ 0.35
CDH3P22223 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH3P22223 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH3P22223 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH3P22223 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH3P22223 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
CDH3P22223 AC022898.2-201ENST00000616822 1312 ntBASIC17.24■□□□□ 0.35
CDH3P22223 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CDH3P22223 AC135776.1-201ENST00000319817 2481 ntBASIC17.24■□□□□ 0.35
CDH3P22223 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH3P22223 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 DFFB-203ENST00000341385 572 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH3P22223 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH3P22223 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.24■□□□□ 0.35
CDH3P22223 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.24■□□□□ 0.35
CDH3P22223 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH3P22223 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH3P22223 AC009533.2-201ENST00000543664 586 ntBASIC17.24■□□□□ 0.35
CDH3P22223 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH3P22223 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH3P22223 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH3P22223 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 AC093677.2-201ENST00000600169 1863 ntBASIC17.23■□□□□ 0.35
CDH3P22223 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH3P22223 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH3P22223 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 AL591684.3-201ENST00000605187 298 ntBASIC17.23■□□□□ 0.35
CDH3P22223 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CDH3P22223 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CDH3P22223 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH3P22223 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms