Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.02■□□□□ 0.47
VCANP13611 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.02■□□□□ 0.47
VCANP13611 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.02■□□□□ 0.47
VCANP13611 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VCANP13611 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VCANP13611 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.01■□□□□ 0.47
VCANP13611 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
VCANP13611 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
VCANP13611 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.01■□□□□ 0.47
VCANP13611 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18■□□□□ 0.47
VCANP13611 AC096633.1-201ENST00000422446 749 ntBASIC18■□□□□ 0.47
VCANP13611 AL353779.1-201ENST00000434793 351 ntBASIC18■□□□□ 0.47
VCANP13611 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC18■□□□□ 0.47
VCANP13611 AC140912.1-201ENST00000577171 1054 ntBASIC18■□□□□ 0.47
VCANP13611 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC18■□□□□ 0.47
VCANP13611 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 PI4KAP1-204ENST00000612579 1703 ntBASIC18■□□□□ 0.47
VCANP13611 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VCANP13611 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
VCANP13611 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
VCANP13611 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18■□□□□ 0.47
VCANP13611 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 ACTBP11-201ENST00000436287 1126 ntBASIC18■□□□□ 0.47
VCANP13611 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 FAM86C2P-203ENST00000528684 1004 ntBASIC18■□□□□ 0.47
VCANP13611 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
VCANP13611 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18■□□□□ 0.47
VCANP13611 AL138828.2-201ENST00000615812 383 ntBASIC18■□□□□ 0.47
VCANP13611 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18■□□□□ 0.47
VCANP13611 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18■□□□□ 0.47
VCANP13611 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.99■□□□□ 0.47
VCANP13611 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.99■□□□□ 0.47
VCANP13611 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.99■□□□□ 0.47
VCANP13611 GABARAPL3-202ENST00000624044 1851 ntBASIC17.99■□□□□ 0.47
VCANP13611 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
VCANP13611 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.99■□□□□ 0.47
VCANP13611 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 ACTL9-202ENST00000612068 1252 ntBASIC17.99■□□□□ 0.47
VCANP13611 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
VCANP13611 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
VCANP13611 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.99■□□□□ 0.47
VCANP13611 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.99■□□□□ 0.47
VCANP13611 AC093484.2-201ENST00000580996 2166 ntBASIC17.98■□□□□ 0.47
VCANP13611 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 FAM185BP-201ENST00000443595 716 ntBASIC17.98■□□□□ 0.47
VCANP13611 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
VCANP13611 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.98■□□□□ 0.47
VCANP13611 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
VCANP13611 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms