Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC21.32■■□□□ 1
COL4A1P02462 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 AL354751.1-201ENST00000412768 1863 ntBASIC21.32■■□□□ 1
COL4A1P02462 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
COL4A1P02462 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC21.31■■□□□ 1
COL4A1P02462 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC21.31■■□□□ 1
COL4A1P02462 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 AC109322.1-201ENST00000524499 1264 ntBASIC21.31■■□□□ 1
COL4A1P02462 SNHG9-202ENST00000564014 471 ntBASIC21.31■■□□□ 1
COL4A1P02462 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC21.31■■□□□ 1
COL4A1P02462 AC106028.4-201ENST00000614509 607 ntBASIC21.31■■□□□ 1
COL4A1P02462 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.31■■□□□ 1
COL4A1P02462 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC21.31■■□□□ 1
COL4A1P02462 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.31■■□□□ 1
COL4A1P02462 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.31■■□□□ 1
COL4A1P02462 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
COL4A1P02462 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC21.31■■□□□ 1
COL4A1P02462 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.31■■□□□ 1
COL4A1P02462 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC21.31■■□□□ 1
COL4A1P02462 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.31■■□□□ 1
COL4A1P02462 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.31■■□□□ 1
COL4A1P02462 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
COL4A1P02462 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.31■■□□□ 1
COL4A1P02462 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A1P02462 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COL4A1P02462 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
COL4A1P02462 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.3■■□□□ 1
COL4A1P02462 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.3■■□□□ 1
COL4A1P02462 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC21.3■■□□□ 1
COL4A1P02462 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC21.3■■□□□ 1
COL4A1P02462 AP002472.1-201ENST00000577490 586 ntBASIC21.3■■□□□ 1
COL4A1P02462 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.3■■□□□ 1
COL4A1P02462 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
COL4A1P02462 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.3■■□□□ 1
COL4A1P02462 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.3■■□□□ 1
COL4A1P02462 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.3■■□□□ 1
COL4A1P02462 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC21.3■■□□□ 1
COL4A1P02462 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A1P02462 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC21.29■■□□□ 1
COL4A1P02462 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 LYSMD4-203ENST00000378904 2122 ntBASIC21.29■■□□□ 1
COL4A1P02462 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC21.29■■□□□ 1
COL4A1P02462 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC21.29■■□□□ 1
COL4A1P02462 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.29■■□□□ 1
COL4A1P02462 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.29■■□□□ 1
COL4A1P02462 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
COL4A1P02462 AC074386.1-202ENST00000463561 864 ntBASIC21.29■■□□□ 1
COL4A1P02462 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC21.29■■□□□ 1
COL4A1P02462 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC21.29■■□□□ 1
COL4A1P02462 AC023141.13-201ENST00000604991 943 ntBASIC21.29■■□□□ 1
COL4A1P02462 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC21.29■■□□□ 1
COL4A1P02462 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.29■■□□□ 1
COL4A1P02462 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
COL4A1P02462 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.29■■□□□ 1
COL4A1P02462 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A1P02462 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 AC012317.2-201ENST00000623305 2251 ntBASIC21.28■■□□□ 1
COL4A1P02462 FALEC-201ENST00000416894 566 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.28■■□□□ 1
COL4A1P02462 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 RPL28-209ENST00000560055 670 ntTSL 3 BASIC21.28■■□□□ 1
COL4A1P02462 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms