Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 RNA5SP413-201ENST00000516373 109 ntBASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AC016396.2-201ENST00000562575 1417 ntBASIC13.26□□□□□ -0.29
HLA-DQA1P01909 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AC060766.5-201ENST00000590539 871 ntBASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AC083880.1-201ENST00000608266 535 ntBASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 AC067930.6-201ENST00000623257 4947 ntBASIC13.26□□□□□ -0.29
HLA-DQA1P01909 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.26□□□□□ -0.29
HLA-DQA1P01909 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AL109659.2-201ENST00000606809 1674 ntBASIC13.25□□□□□ -0.29
HLA-DQA1P01909 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 GLRB-205ENST00000512619 728 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 PNMA6B-201ENST00000538162 1200 ntBASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 AC142086.2-201ENST00000569753 217 ntBASIC13.25□□□□□ -0.29
HLA-DQA1P01909 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 MYC-209ENST00000641252 345 ntBASIC13.25□□□□□ -0.29
HLA-DQA1P01909 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
HLA-DQA1P01909 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 KRT8P11-201ENST00000409686 1436 ntBASIC13.24□□□□□ -0.29
HLA-DQA1P01909 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.24□□□□□ -0.29
HLA-DQA1P01909 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 OR2A1-AS1-207ENST00000486094 819 ntBASIC13.24□□□□□ -0.29
HLA-DQA1P01909 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 SOX15-203ENST00000570788 1093 ntBASIC13.24□□□□□ -0.29
HLA-DQA1P01909 INO80E-214ENST00000620599 515 ntTSL 2 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 HLA-B-256ENST00000639848 1089 ntBASIC13.24□□□□□ -0.29
HLA-DQA1P01909 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HLA-DQA1P01909 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms