Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC28.09■■■□□ 2.09
CHD1O14646 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
CHD1O14646 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CHD1O14646 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CHD1O14646 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
CHD1O14646 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CHD1O14646 AC093484.2-201ENST00000580996 2166 ntBASIC28.09■■■□□ 2.09
CHD1O14646 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
CHD1O14646 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CHD1O14646 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC28.08■■■□□ 2.09
CHD1O14646 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC28.08■■■□□ 2.09
CHD1O14646 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CHD1O14646 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
CHD1O14646 AL512384.1-201ENST00000406683 331 ntBASIC28.08■■■□□ 2.09
CHD1O14646 HMGA1P7-201ENST00000406908 502 ntBASIC28.08■■■□□ 2.09
CHD1O14646 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC28.08■■■□□ 2.09
CHD1O14646 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CHD1O14646 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC28.08■■■□□ 2.09
CHD1O14646 MIR4515-201ENST00000584082 81 ntBASIC28.08■■■□□ 2.09
CHD1O14646 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC28.08■■■□□ 2.09
CHD1O14646 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
CHD1O14646 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC28.08■■■□□ 2.09
CHD1O14646 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC28.08■■■□□ 2.08
CHD1O14646 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 AP006294.1-201ENST00000415407 339 ntBASIC28.07■■■□□ 2.08
CHD1O14646 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC28.07■■■□□ 2.08
CHD1O14646 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC28.07■■■□□ 2.08
CHD1O14646 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC28.07■■■□□ 2.08
CHD1O14646 AL162274.1-201ENST00000617191 1098 ntBASIC28.07■■■□□ 2.08
CHD1O14646 AC008267.7-201ENST00000624570 1194 ntBASIC28.07■■■□□ 2.08
CHD1O14646 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
CHD1O14646 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC28.07■■■□□ 2.08
CHD1O14646 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC28.07■■■□□ 2.08
CHD1O14646 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC28.07■■■□□ 2.08
CHD1O14646 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC28.07■■■□□ 2.08
CHD1O14646 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC28.07■■■□□ 2.08
CHD1O14646 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC28.06■■■□□ 2.08
CHD1O14646 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC28.06■■■□□ 2.08
CHD1O14646 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 RNA5-8SN1-201ENST00000610460 153 ntBASIC28.06■■■□□ 2.08
CHD1O14646 RNA5-8SN5-202ENST00000612463 153 ntBASIC28.06■■■□□ 2.08
CHD1O14646 RNA5-8SN4-201ENST00000613359 153 ntBASIC28.06■■■□□ 2.08
CHD1O14646 RNA5-8SN5-201ENST00000619471 153 ntBASIC28.06■■■□□ 2.08
CHD1O14646 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC28.06■■■□□ 2.08
CHD1O14646 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC28.06■■■□□ 2.08
CHD1O14646 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC28.06■■■□□ 2.08
CHD1O14646 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC28.06■■■□□ 2.08
CHD1O14646 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC28.06■■■□□ 2.08
CHD1O14646 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC28.06■■■□□ 2.08
CHD1O14646 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
CHD1O14646 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC28.05■■■□□ 2.08
CHD1O14646 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC28.05■■■□□ 2.08
CHD1O14646 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC28.05■■■□□ 2.08
CHD1O14646 MYCLP1-201ENST00000372451 1075 ntBASIC28.05■■■□□ 2.08
CHD1O14646 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC28.05■■■□□ 2.08
CHD1O14646 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC28.05■■■□□ 2.08
CHD1O14646 MPI-209ENST00000564003 1195 ntTSL 2 BASIC28.05■■■□□ 2.08
CHD1O14646 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC28.05■■■□□ 2.08
CHD1O14646 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC28.05■■■□□ 2.08
CHD1O14646 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC28.05■■■□□ 2.08
CHD1O14646 AC027307.2-201ENST00000591252 911 ntBASIC28.05■■■□□ 2.08
CHD1O14646 AC007967.4-201ENST00000614700 386 ntBASIC28.05■■■□□ 2.08
CHD1O14646 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC28.05■■■□□ 2.08
CHD1O14646 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC28.05■■■□□ 2.08
CHD1O14646 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
CHD1O14646 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CHD1O14646 PARP8-218ENST00000513738 596 ntTSL 4 BASIC28.04■■■□□ 2.08
CHD1O14646 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CHD1O14646 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC28.04■■■□□ 2.08
CHD1O14646 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC28.04■■■□□ 2.08
CHD1O14646 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CHD1O14646 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
CHD1O14646 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms