Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
CBX4O00257 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CBX4O00257 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.99■□□□□ 0.47
CBX4O00257 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CBX4O00257 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
CBX4O00257 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.98■□□□□ 0.47
CBX4O00257 AC109462.3-201ENST00000573934 613 ntBASIC17.98■□□□□ 0.47
CBX4O00257 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 AC006116.8-202ENST00000587620 1550 ntBASIC17.98■□□□□ 0.47
CBX4O00257 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.98■□□□□ 0.47
CBX4O00257 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CBX4O00257 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CBX4O00257 HLA-A-201ENST00000376802 1334 ntBASIC17.98■□□□□ 0.47
CBX4O00257 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.97■□□□□ 0.47
CBX4O00257 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 AL049757.1-201ENST00000616842 1596 ntBASIC17.97■□□□□ 0.47
CBX4O00257 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.97■□□□□ 0.47
CBX4O00257 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.97■□□□□ 0.47
CBX4O00257 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 AL671883.3-201ENST00000603274 991 ntBASIC17.97■□□□□ 0.47
CBX4O00257 AC019129.2-201ENST00000609837 1235 ntBASIC17.97■□□□□ 0.47
CBX4O00257 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CBX4O00257 AD001527.2-201ENST00000622994 785 ntBASIC17.97■□□□□ 0.47
CBX4O00257 AP000867.4-201ENST00000641616 219 ntBASIC17.97■□□□□ 0.47
CBX4O00257 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
CBX4O00257 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 REXO1L11P-201ENST00000620964 1927 ntBASIC17.97■□□□□ 0.47
CBX4O00257 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CBX4O00257 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.97■□□□□ 0.47
CBX4O00257 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.97■□□□□ 0.47
CBX4O00257 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CBX4O00257 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.96■□□□□ 0.47
CBX4O00257 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CBX4O00257 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 FGFR3P6-201ENST00000457012 610 ntBASIC17.96■□□□□ 0.47
CBX4O00257 IGHV3-52-201ENST00000519770 353 ntBASIC17.96■□□□□ 0.47
CBX4O00257 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.96■□□□□ 0.47
CBX4O00257 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.96■□□□□ 0.47
CBX4O00257 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CBX4O00257 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CBX4O00257 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CBX4O00257 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CBX4O00257 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms