Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC85CA6NKD9 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 NEU3-203ENST00000529024 581 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 AC135586.1-201ENST00000539323 574 ntBASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 AP000842.3-202ENST00000569238 1080 ntBASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 AC073314.1-201ENST00000568729 2216 ntBASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC85CA6NKD9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 NSL1-201ENST00000366976 722 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 AL355994.2-201ENST00000447882 704 ntBASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 HLA-V-204ENST00000476601 1289 ntBASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 AC079328.1-201ENST00000560358 952 ntBASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 AC109462.3-201ENST00000573934 613 ntBASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC85CA6NKD9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 AL023806.1-201ENST00000603994 1649 ntBASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 BOLA2P3-201ENST00000404566 256 ntBASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 FXNP2-201ENST00000411625 547 ntBASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC85CA6NKD9 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms