Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SSX2IPQ9Y2D8 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AC009113.1-201ENST00000570267 2443 ntBASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SSX2IPQ9Y2D8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AC132938.6-201ENST00000623828 1655 ntBASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 LBH-204ENST00000406087 559 ntTSL 4 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 PRYP5-201ENST00000451909 266 ntBASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 RNA5SP415-201ENST00000517246 115 ntBASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AC034105.1-201ENST00000563488 319 ntBASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SSX2IPQ9Y2D8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 ESPNP-201ENST00000270691 2015 ntBASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 PMPCAP1-201ENST00000508114 1576 ntBASIC18.91■□□□□ 0.62
SSX2IPQ9Y2D8 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms