Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 AC005104.2-201ENST00000427818 678 ntBASIC18.2■□□□□ 0.5
PCDH9Q9HC56 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDH9Q9HC56 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 KRT8P26-201ENST00000534154 1276 ntBASIC18.19■□□□□ 0.5
PCDH9Q9HC56 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 AC099398.1-201ENST00000567919 2776 ntBASIC18.19■□□□□ 0.5
PCDH9Q9HC56 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDH9Q9HC56 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 AC091076.1-201ENST00000610741 619 ntBASIC18.18■□□□□ 0.5
PCDH9Q9HC56 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDH9Q9HC56 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 AC016396.2-201ENST00000562575 1417 ntBASIC18.17■□□□□ 0.5
PCDH9Q9HC56 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 BX276092.5-203ENST00000456199 560 ntBASIC18.17■□□□□ 0.5
PCDH9Q9HC56 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 AL121672.3-201ENST00000608644 468 ntBASIC18.17■□□□□ 0.5
PCDH9Q9HC56 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.17■□□□□ 0.5
PCDH9Q9HC56 ANKRD20A8P-203ENST00000641373 517 ntBASIC18.17■□□□□ 0.5
PCDH9Q9HC56 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms