Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VPS13AQ96RL7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 PARP8-206ENST00000503665 572 ntTSL 4 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 AC112191.1-201ENST00000523689 701 ntBASIC17.24■□□□□ 0.35
VPS13AQ96RL7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS13AQ96RL7 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.23■□□□□ 0.35
VPS13AQ96RL7 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 RN7SL589P-201ENST00000481268 310 ntBASIC17.23■□□□□ 0.35
VPS13AQ96RL7 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 PHGDH-209ENST00000641074 1780 ntBASIC17.23■□□□□ 0.35
VPS13AQ96RL7 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 AC017083.2-201ENST00000608069 979 ntBASIC17.23■□□□□ 0.35
VPS13AQ96RL7 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS13AQ96RL7 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 AC022144.1-201ENST00000602255 1580 ntBASIC17.22■□□□□ 0.35
VPS13AQ96RL7 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 PI4KAP1-204ENST00000612579 1703 ntBASIC17.22■□□□□ 0.35
VPS13AQ96RL7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS13AQ96RL7 GIMAP3P-201ENST00000495150 836 ntBASIC17.22■□□□□ 0.35
VPS13AQ96RL7 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms