Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 KRT8P47-201ENST00000604727 1398 ntBASIC13.22□□□□□ -0.29
LINC00477Q96M19 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 ANKRD20A18P-201ENST00000359341 492 ntBASIC13.22□□□□□ -0.29
LINC00477Q96M19 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
LINC00477Q96M19 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
LINC00477Q96M19 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 AC005104.2-201ENST00000427818 678 ntBASIC13.21□□□□□ -0.29
LINC00477Q96M19 HLA-F-220ENST00000434407 884 ntBASIC13.21□□□□□ -0.29
LINC00477Q96M19 SLC25A3P1-201ENST00000443844 931 ntBASIC13.21□□□□□ -0.29
LINC00477Q96M19 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC13.21□□□□□ -0.29
LINC00477Q96M19 AC004263.2-201ENST00000617183 678 ntBASIC13.21□□□□□ -0.29
LINC00477Q96M19 AL023973.1-201ENST00000624619 620 ntBASIC13.21□□□□□ -0.29
LINC00477Q96M19 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
LINC00477Q96M19 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
LINC00477Q96M19 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC13.21□□□□□ -0.3
LINC00477Q96M19 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
LINC00477Q96M19 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.2□□□□□ -0.3
LINC00477Q96M19 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms