Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HPS3Q969F9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
HPS3Q969F9 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HPS3Q969F9 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HPS3Q969F9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.5■□□□□ 0.71
HPS3Q969F9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC19.5■□□□□ 0.71
HPS3Q969F9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.5■□□□□ 0.71
HPS3Q969F9 AC246785.2-201ENST00000432512 513 ntBASIC19.5■□□□□ 0.71
HPS3Q969F9 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC19.5■□□□□ 0.71
HPS3Q969F9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.5■□□□□ 0.71
HPS3Q969F9 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.5■□□□□ 0.71
HPS3Q969F9 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
HPS3Q969F9 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HPS3Q969F9 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.5■□□□□ 0.71
HPS3Q969F9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HPS3Q969F9 NSUN5P1-202ENST00000421140 1535 ntBASIC19.5■□□□□ 0.71
HPS3Q969F9 NSUN5P2-203ENST00000457352 1529 ntBASIC19.5■□□□□ 0.71
HPS3Q969F9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
HPS3Q969F9 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.49■□□□□ 0.71
HPS3Q969F9 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 KRT17P6-201ENST00000453795 1220 ntBASIC19.49■□□□□ 0.71
HPS3Q969F9 AP000867.3-201ENST00000524675 377 ntBASIC19.49■□□□□ 0.71
HPS3Q969F9 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC19.49■□□□□ 0.71
HPS3Q969F9 AC109462.3-201ENST00000573934 613 ntBASIC19.49■□□□□ 0.71
HPS3Q969F9 BNIP3P18-201ENST00000593976 575 ntBASIC19.49■□□□□ 0.71
HPS3Q969F9 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC19.49■□□□□ 0.71
HPS3Q969F9 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.49■□□□□ 0.71
HPS3Q969F9 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HPS3Q969F9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HPS3Q969F9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.48■□□□□ 0.71
HPS3Q969F9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
HPS3Q969F9 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.48■□□□□ 0.71
HPS3Q969F9 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 AL023806.1-201ENST00000603994 1649 ntBASIC19.48■□□□□ 0.71
HPS3Q969F9 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.48■□□□□ 0.71
HPS3Q969F9 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
HPS3Q969F9 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.48■□□□□ 0.71
HPS3Q969F9 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
HPS3Q969F9 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.48■□□□□ 0.71
HPS3Q969F9 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 IGHV3-47-201ENST00000425060 335 ntBASIC19.48■□□□□ 0.71
HPS3Q969F9 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.48■□□□□ 0.71
HPS3Q969F9 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HPS3Q969F9 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.48■□□□□ 0.71
HPS3Q969F9 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.48■□□□□ 0.71
HPS3Q969F9 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.48■□□□□ 0.71
HPS3Q969F9 AC074051.2-201ENST00000565115 352 ntBASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms