Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 IGHV3-52-201ENST00000519770 353 ntBASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 AC068137.2-201ENST00000605408 478 ntBASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
SLC44A3Q8N4M1 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 MIR4745-201ENST00000577608 62 ntBASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 LINC00628-201ENST00000628516 1289 ntBASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC44A3Q8N4M1 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 DDX43P3-201ENST00000441064 443 ntBASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 AC023141.5-201ENST00000458585 616 ntBASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC44A3Q8N4M1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 BX276092.7-203ENST00000637198 1536 ntBASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
SLC44A3Q8N4M1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms