Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 SART3-203ENST00000546611 1184 ntBASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 AL139288.1-201ENST00000623748 933 ntBASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.24■□□□□ 0.19
C9orf40Q8IXQ3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 SIGLEC16-201ENST00000599858 1437 ntBASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 STK19B-204ENST00000512515 211 ntBASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 AP002469.2-201ENST00000531724 424 ntBASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 NKAPP1-205ENST00000585790 367 ntBASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
C9orf40Q8IXQ3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 AL020989.1-201ENST00000422979 469 ntBASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 SCARNA2-201ENST00000458748 420 ntBASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 BX005266.1-201ENST00000473402 457 ntBASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 AL160237.2-201ENST00000556165 472 ntBASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 AC004817.3-201ENST00000602957 2129 ntBASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
C9orf40Q8IXQ3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
C9orf40Q8IXQ3 AC009336.1-201ENST00000608941 1553 ntBASIC16.21■□□□□ 0.19
C9orf40Q8IXQ3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
C9orf40Q8IXQ3 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms