Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 AC116351.2-201ENST00000606540 1585 ntBASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC14.75□□□□□ -0.05
CCDC28AQ8IWP9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AL096828.2-201ENST00000567259 1965 ntBASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 DUX4L16-201ENST00000555130 1264 ntBASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AC006058.4-201ENST00000624016 1670 ntBASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.74□□□□□ -0.05
CCDC28AQ8IWP9 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 AL365203.3-201ENST00000609742 2057 ntBASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 ME3-201ENST00000323418 1068 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 RARRES2P4-201ENST00000514074 484 ntBASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
CCDC28AQ8IWP9 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms