Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 TK1-204ENST00000590430 683 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AC003669.1-201ENST00000334569 611 ntBASIC12.14□□□□□ -0.47
CSMD3Q7Z407 ARSEP1-201ENST00000420443 635 ntBASIC12.14□□□□□ -0.47
CSMD3Q7Z407 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 SERF2-217ENST00000630046 862 ntTSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 CYP51A1P2-201ENST00000419457 1499 ntBASIC12.14□□□□□ -0.47
CSMD3Q7Z407 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
CSMD3Q7Z407 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 NKTR-203ENST00000442970 646 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 LINC02560-201ENST00000596379 459 ntBASIC12.13□□□□□ -0.47
CSMD3Q7Z407 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ACTL9-202ENST00000612068 1252 ntBASIC12.13□□□□□ -0.47
CSMD3Q7Z407 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 PTCHD3P3-201ENST00000403073 906 ntBASIC12.13□□□□□ -0.47
CSMD3Q7Z407 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 AC087289.5-201ENST00000586076 3175 ntBASIC12.13□□□□□ -0.47
CSMD3Q7Z407 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 NABP1-203ENST00000409510 843 ntTSL 5 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CSMD3Q7Z407 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 FLYWCH1P1-201ENST00000460917 1874 ntBASIC12.12□□□□□ -0.47
CSMD3Q7Z407 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.12□□□□□ -0.47
CSMD3Q7Z407 SPTLC1P1-201ENST00000447199 261 ntBASIC12.12□□□□□ -0.47
CSMD3Q7Z407 AC067863.1-201ENST00000494933 530 ntBASIC12.12□□□□□ -0.47
CSMD3Q7Z407 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms