Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 AC023141.13-201ENST00000604991 943 ntBASIC14.54□□□□□ -0.08
VPS13CQ709C8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 AC087289.5-201ENST00000586076 3175 ntBASIC14.54□□□□□ -0.08
VPS13CQ709C8 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 KRT8P48-201ENST00000515599 1220 ntBASIC14.54□□□□□ -0.08
VPS13CQ709C8 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS13CQ709C8 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS13CQ709C8 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 AC069335.1-201ENST00000489972 472 ntBASIC14.53□□□□□ -0.08
VPS13CQ709C8 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CENPM-205ENST00000404067 905 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 RPS15P9-201ENST00000494093 319 ntBASIC14.53□□□□□ -0.08
VPS13CQ709C8 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 REXO1L9P-201ENST00000604264 2108 ntBASIC14.53□□□□□ -0.08
VPS13CQ709C8 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 AL627223.1-201ENST00000416693 442 ntBASIC14.53□□□□□ -0.08
VPS13CQ709C8 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.53□□□□□ -0.08
VPS13CQ709C8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 AC025678.2-201ENST00000562061 970 ntBASIC14.53□□□□□ -0.08
VPS13CQ709C8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS13CQ709C8 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.53□□□□□ -0.08
VPS13CQ709C8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13CQ709C8 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13CQ709C8 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13CQ709C8 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13CQ709C8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13CQ709C8 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS13CQ709C8 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC14.52□□□□□ -0.08
VPS13CQ709C8 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
VPS13CQ709C8 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13CQ709C8 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS13CQ709C8 TIMM8BP1-201ENST00000452384 211 ntBASIC14.52□□□□□ -0.09
VPS13CQ709C8 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS13CQ709C8 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms