Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC40Q4G0X9 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 CROCCP2-202ENST00000412962 2773 ntBASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC40Q4G0X9 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.39■□□□□ 0.7
CCDC40Q4G0X9 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CCDC40Q4G0X9 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
CCDC40Q4G0X9 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CCDC40Q4G0X9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 SIRPAP1-201ENST00000448467 1770 ntBASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.39■□□□□ 0.69
CCDC40Q4G0X9 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
CCDC40Q4G0X9 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms