Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.27■□□□□ 0.36
SHMT2P34897 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 NUS1P2-201ENST00000417358 873 ntBASIC17.27■□□□□ 0.36
SHMT2P34897 AC096633.1-201ENST00000422446 749 ntBASIC17.27■□□□□ 0.36
SHMT2P34897 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.27■□□□□ 0.36
SHMT2P34897 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.27■□□□□ 0.36
SHMT2P34897 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.27■□□□□ 0.36
SHMT2P34897 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 AC114341.1-201ENST00000618070 349 ntBASIC17.27■□□□□ 0.36
SHMT2P34897 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SHMT2P34897 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
SHMT2P34897 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
SHMT2P34897 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SHMT2P34897 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.27■□□□□ 0.35
SHMT2P34897 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.27■□□□□ 0.35
SHMT2P34897 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC17.27■□□□□ 0.35
SHMT2P34897 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SHMT2P34897 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SHMT2P34897 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.27■□□□□ 0.35
SHMT2P34897 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
SHMT2P34897 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.27■□□□□ 0.35
SHMT2P34897 KRT18P55-202ENST00000578578 1546 ntBASIC17.26■□□□□ 0.35
SHMT2P34897 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.26■□□□□ 0.35
SHMT2P34897 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
SHMT2P34897 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.26■□□□□ 0.35
SHMT2P34897 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.26■□□□□ 0.35
SHMT2P34897 TSPY19P-201ENST00000418461 509 ntBASIC17.26■□□□□ 0.35
SHMT2P34897 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.26■□□□□ 0.35
SHMT2P34897 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC17.26■□□□□ 0.35
SHMT2P34897 TSPY18P-201ENST00000441642 509 ntBASIC17.26■□□□□ 0.35
SHMT2P34897 KRT16P4-201ENST00000453883 522 ntBASIC17.26■□□□□ 0.35
SHMT2P34897 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 LINC01711-201ENST00000598340 967 ntBASIC17.26■□□□□ 0.35
SHMT2P34897 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
SHMT2P34897 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
SHMT2P34897 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SHMT2P34897 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 TP73-AS1-210ENST00000637775 1455 ntBASIC17.25■□□□□ 0.35
SHMT2P34897 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.25■□□□□ 0.35
SHMT2P34897 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.25■□□□□ 0.35
SHMT2P34897 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
SHMT2P34897 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.25■□□□□ 0.35
SHMT2P34897 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.25■□□□□ 0.35
SHMT2P34897 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.25■□□□□ 0.35
SHMT2P34897 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 AL450487.1-201ENST00000426799 995 ntBASIC17.25■□□□□ 0.35
SHMT2P34897 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 KRT126P-201ENST00000549467 1181 ntBASIC17.25■□□□□ 0.35
SHMT2P34897 AC091304.2-201ENST00000564639 760 ntBASIC17.25■□□□□ 0.35
SHMT2P34897 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.25■□□□□ 0.35
SHMT2P34897 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.25■□□□□ 0.35
SHMT2P34897 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.25■□□□□ 0.35
SHMT2P34897 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SHMT2P34897 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
SHMT2P34897 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms