Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 ACTG1P4-201ENST00000425123 1122 ntBASIC20.16■□□□□ 0.82
SMARCA1P28370 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 HNRNPDP1-201ENST00000439535 754 ntBASIC20.16■□□□□ 0.82
SMARCA1P28370 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.16■□□□□ 0.82
SMARCA1P28370 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.16■□□□□ 0.82
SMARCA1P28370 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.16■□□□□ 0.82
SMARCA1P28370 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.16■□□□□ 0.82
SMARCA1P28370 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.16■□□□□ 0.82
SMARCA1P28370 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.16■□□□□ 0.82
SMARCA1P28370 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.16■□□□□ 0.82
SMARCA1P28370 AC004817.3-201ENST00000602957 2129 ntBASIC20.16■□□□□ 0.82
SMARCA1P28370 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
SMARCA1P28370 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC20.16■□□□□ 0.82
SMARCA1P28370 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.16■□□□□ 0.82
SMARCA1P28370 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMARCA1P28370 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.15■□□□□ 0.82
SMARCA1P28370 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 LAGE3P1-201ENST00000425356 484 ntBASIC20.15■□□□□ 0.82
SMARCA1P28370 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.15■□□□□ 0.82
SMARCA1P28370 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.15■□□□□ 0.82
SMARCA1P28370 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 AC139887.3-201ENST00000568585 713 ntBASIC20.15■□□□□ 0.82
SMARCA1P28370 AC148477.8-201ENST00000624298 468 ntBASIC20.15■□□□□ 0.82
SMARCA1P28370 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.15■□□□□ 0.82
SMARCA1P28370 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMARCA1P28370 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC20.15■□□□□ 0.82
SMARCA1P28370 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
SMARCA1P28370 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 AL135999.2-201ENST00000622438 1686 ntBASIC20.14■□□□□ 0.81
SMARCA1P28370 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SMARCA1P28370 NCF1C-201ENST00000438382 1427 ntBASIC20.14■□□□□ 0.81
SMARCA1P28370 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC20.14■□□□□ 0.81
SMARCA1P28370 HLA-A-201ENST00000376802 1334 ntBASIC20.14■□□□□ 0.81
SMARCA1P28370 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.14■□□□□ 0.81
SMARCA1P28370 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 AL031284.1-201ENST00000419297 478 ntBASIC20.14■□□□□ 0.81
SMARCA1P28370 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.14■□□□□ 0.81
SMARCA1P28370 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
SMARCA1P28370 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SMARCA1P28370 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SMARCA1P28370 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SMARCA1P28370 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMARCA1P28370 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SMARCA1P28370 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC20.14■□□□□ 0.81
SMARCA1P28370 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SMARCA1P28370 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.14■□□□□ 0.81
SMARCA1P28370 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC20.13■□□□□ 0.81
SMARCA1P28370 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.13■□□□□ 0.81
SMARCA1P28370 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC20.13■□□□□ 0.81
SMARCA1P28370 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMARCA1P28370 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.13■□□□□ 0.81
SMARCA1P28370 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC20.13■□□□□ 0.81
SMARCA1P28370 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.13■□□□□ 0.81
SMARCA1P28370 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC20.13■□□□□ 0.81
SMARCA1P28370 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms