Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR5100-201ENST00000579544 119 ntBASIC16.58■□□□□ 0.24
LDB3O75112 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.58■□□□□ 0.24
LDB3O75112 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.58■□□□□ 0.24
LDB3O75112 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
LDB3O75112 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.58■□□□□ 0.24
LDB3O75112 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LDB3O75112 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
LDB3O75112 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.58■□□□□ 0.24
LDB3O75112 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LDB3O75112 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LDB3O75112 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
LDB3O75112 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LDB3O75112 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB3O75112 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LDB3O75112 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 KRT16P4-201ENST00000453883 522 ntBASIC16.57■□□□□ 0.24
LDB3O75112 KRT18P31-201ENST00000506277 1292 ntBASIC16.57■□□□□ 0.24
LDB3O75112 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.57■□□□□ 0.24
LDB3O75112 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.57■□□□□ 0.24
LDB3O75112 AL591684.3-201ENST00000605187 298 ntBASIC16.57■□□□□ 0.24
LDB3O75112 AL121772.3-201ENST00000610840 674 ntBASIC16.57■□□□□ 0.24
LDB3O75112 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB3O75112 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB3O75112 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.57■□□□□ 0.24
LDB3O75112 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.57■□□□□ 0.24
LDB3O75112 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LDB3O75112 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 HARS-201ENST00000307633 1780 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 AC133963.1-201ENST00000504166 1679 ntBASIC16.56■□□□□ 0.24
LDB3O75112 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 HLA-J-201ENST00000462773 1622 ntBASIC16.56■□□□□ 0.24
LDB3O75112 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB3O75112 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.56■□□□□ 0.24
LDB3O75112 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
LDB3O75112 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB3O75112 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.56■□□□□ 0.24
LDB3O75112 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB3O75112 AC109462.3-201ENST00000573934 613 ntBASIC16.56■□□□□ 0.24
LDB3O75112 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.56■□□□□ 0.24
LDB3O75112 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LDB3O75112 LINC01451-201ENST00000623792 534 ntBASIC16.56■□□□□ 0.24
LDB3O75112 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.56■□□□□ 0.24
LDB3O75112 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDB3O75112 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.55■□□□□ 0.24
LDB3O75112 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LDB3O75112 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDB3O75112 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.55■□□□□ 0.24
LDB3O75112 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.55■□□□□ 0.24
LDB3O75112 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LDB3O75112 TSPY19P-201ENST00000418461 509 ntBASIC16.55■□□□□ 0.24
LDB3O75112 AC103564.2-201ENST00000432853 1299 ntBASIC16.55■□□□□ 0.24
LDB3O75112 DUSP5P1-201ENST00000441325 1139 ntBASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms