Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 AC024909.3-201ENST00000611513 2257 ntBASIC17.38■□□□□ 0.37
SNX3O60493 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.38■□□□□ 0.37
SNX3O60493 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SNX3O60493 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 KRT16P1-201ENST00000399124 1418 ntBASIC17.38■□□□□ 0.37
SNX3O60493 LINC01311-201ENST00000565162 1445 ntBASIC17.38■□□□□ 0.37
SNX3O60493 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SNX3O60493 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SNX3O60493 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.38■□□□□ 0.37
SNX3O60493 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SNX3O60493 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SNX3O60493 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SNX3O60493 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.37■□□□□ 0.37
SNX3O60493 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC17.37■□□□□ 0.37
SNX3O60493 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 AC069544.1-201ENST00000609399 999 ntBASIC17.37■□□□□ 0.37
SNX3O60493 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SNX3O60493 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SNX3O60493 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 AC068418.2-201ENST00000577309 3703 ntBASIC17.37■□□□□ 0.37
SNX3O60493 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SNX3O60493 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
SNX3O60493 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 SLC25A1P3-201ENST00000395415 828 ntBASIC17.36■□□□□ 0.37
SNX3O60493 AC239809.2-201ENST00000415381 517 ntBASIC17.36■□□□□ 0.37
SNX3O60493 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.36■□□□□ 0.37
SNX3O60493 UNC93B5-201ENST00000530315 699 ntBASIC17.36■□□□□ 0.37
SNX3O60493 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.36■□□□□ 0.37
SNX3O60493 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
SNX3O60493 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.36■□□□□ 0.37
SNX3O60493 AP000692.2-201ENST00000608391 879 ntBASIC17.36■□□□□ 0.37
SNX3O60493 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.36■□□□□ 0.37
SNX3O60493 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.36■□□□□ 0.37
SNX3O60493 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
SNX3O60493 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SNX3O60493 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.35■□□□□ 0.37
SNX3O60493 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
SNX3O60493 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.35■□□□□ 0.37
SNX3O60493 B3GAT3P1-201ENST00000471720 806 ntBASIC17.35■□□□□ 0.37
SNX3O60493 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
SNX3O60493 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
SNX3O60493 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms