Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGN4O00479 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.38■□□□□ 0.21
HMGN4O00479 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGN4O00479 TMPOP1-202ENST00000424642 1267 ntBASIC16.38■□□□□ 0.21
HMGN4O00479 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGN4O00479 AC007967.3-201ENST00000434308 558 ntBASIC16.38■□□□□ 0.21
HMGN4O00479 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.38■□□□□ 0.21
HMGN4O00479 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.38■□□□□ 0.21
HMGN4O00479 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
HMGN4O00479 AL353801.3-201ENST00000609898 542 ntBASIC16.38■□□□□ 0.21
HMGN4O00479 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGN4O00479 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGN4O00479 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.38■□□□□ 0.21
HMGN4O00479 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGN4O00479 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 AL121761.2-201ENST00000598007 1648 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGN4O00479 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 AC116353.5-201ENST00000638148 1699 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGN4O00479 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.37■□□□□ 0.21
HMGN4O00479 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.37■□□□□ 0.21
HMGN4O00479 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 AL136038.3-201ENST00000561909 1096 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.37■□□□□ 0.21
HMGN4O00479 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
HMGN4O00479 AC011498.5-201ENST00000592027 486 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 AL592071.1-201ENST00000611956 408 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 AC124864.1-201ENST00000623408 392 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 OR6D1P-202ENST00000641007 5290 ntBASIC16.37■□□□□ 0.21
HMGN4O00479 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HMGN4O00479 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.37■□□□□ 0.21
HMGN4O00479 AC125634.1-201ENST00000438758 1403 ntBASIC16.36■□□□□ 0.21
HMGN4O00479 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.36■□□□□ 0.21
HMGN4O00479 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
HMGN4O00479 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC16.36■□□□□ 0.21
HMGN4O00479 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HMGN4O00479 AL845331.1-201ENST00000424978 1190 ntBASIC16.36■□□□□ 0.21
HMGN4O00479 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms