Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
CCDC88BA6NC98 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
CCDC88BA6NC98 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC30.2■■■□□ 2.42
CCDC88BA6NC98 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.42
CCDC88BA6NC98 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC30.2■■■□□ 2.42
CCDC88BA6NC98 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 GREM1-201ENST00000560677 623 ntTSL 4 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 PTMS-202ENST00000389462 773 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 AC051619.7-201ENST00000568314 623 ntBASIC30.19■■■□□ 2.42
CCDC88BA6NC98 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88BA6NC98 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 AC025678.2-201ENST00000562061 970 ntBASIC30.18■■■□□ 2.42
CCDC88BA6NC98 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC30.18■■■□□ 2.42
CCDC88BA6NC98 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 MADD-208ENST00000405573 1823 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 AP000974.1-201ENST00000623909 2387 ntBASIC30.17■■■□□ 2.42
CCDC88BA6NC98 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 FLJ13224-201ENST00000313737 1514 ntBASIC30.17■■■□□ 2.42
CCDC88BA6NC98 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
CCDC88BA6NC98 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 AC129492.6-201ENST00000611383 1305 ntBASIC30.16■■■□□ 2.42
CCDC88BA6NC98 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 AC002056.1-201ENST00000395613 760 ntBASIC30.16■■■□□ 2.42
CCDC88BA6NC98 HLA-DRB6-201ENST00000411500 1235 ntBASIC30.16■■■□□ 2.42
CCDC88BA6NC98 FAM58DP-201ENST00000428076 619 ntBASIC30.16■■■□□ 2.42
CCDC88BA6NC98 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 AC093503.3-201ENST00000624917 2352 ntBASIC30.16■■■□□ 2.42
CCDC88BA6NC98 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
CCDC88BA6NC98 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 CCDC74BP1-201ENST00000508880 1123 ntBASIC30.15■■■□□ 2.42
CCDC88BA6NC98 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC30.15■■■□□ 2.42
CCDC88BA6NC98 MMP17-203ENST00000535004 719 ntTSL 3 BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms