Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 KRT8P10-201ENST00000450021 1447 ntBASIC18.9■□□□□ 0.62
SIX2Q9NPC8 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.9■□□□□ 0.62
SIX2Q9NPC8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.9■□□□□ 0.62
SIX2Q9NPC8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
SIX2Q9NPC8 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SIX2Q9NPC8 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
SIX2Q9NPC8 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
SIX2Q9NPC8 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 TSSC2-201ENST00000450217 709 ntBASIC18.89■□□□□ 0.61
SIX2Q9NPC8 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 AC233702.3-201ENST00000578656 1387 ntBASIC18.89■□□□□ 0.61
SIX2Q9NPC8 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SIX2Q9NPC8 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 FAM220CP-201ENST00000395253 831 ntBASIC18.88■□□□□ 0.61
SIX2Q9NPC8 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 AL590326.2-201ENST00000625139 305 ntBASIC18.88■□□□□ 0.61
SIX2Q9NPC8 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 AC046185.3-201ENST00000623228 1824 ntBASIC18.88■□□□□ 0.61
SIX2Q9NPC8 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SIX2Q9NPC8 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 DRAXINP1-201ENST00000437611 948 ntBASIC18.87■□□□□ 0.61
SIX2Q9NPC8 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 AC060834.1-201ENST00000443027 2032 ntBASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 AC087388.1-201ENST00000571370 1112 ntBASIC18.87■□□□□ 0.61
SIX2Q9NPC8 MIR3180-1-201ENST00000580374 94 ntBASIC18.87■□□□□ 0.61
SIX2Q9NPC8 MIR3180-3-201ENST00000584616 94 ntBASIC18.87■□□□□ 0.61
SIX2Q9NPC8 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 AC011467.2-201ENST00000598425 242 ntBASIC18.87■□□□□ 0.61
SIX2Q9NPC8 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SIX2Q9NPC8 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms