Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 TPM4P1-201ENST00000436100 807 ntBASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 AC132008.2-207ENST00000454517 770 ntBASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TRIM39Q9HCM9 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AC103564.2-201ENST00000432853 1299 ntBASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TRIM39Q9HCM9 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AC004870.1-201ENST00000315132 882 ntBASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 REXO1L6P-202ENST00000619970 1078 ntBASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TRIM39Q9HCM9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.48■□□□□ 0.39
TRIM39Q9HCM9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms