Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 REXO1L3P-201ENST00000622202 1288 ntBASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.59■■□□□ 1.21
SHANK3Q9BYB0 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 AC004449.1-201ENST00000564240 433 ntBASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 INO80E-210ENST00000567705 880 ntTSL 3 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
SHANK3Q9BYB0 HLA-DQB1-201ENST00000374943 1656 ntBASIC22.58■■□□□ 1.2
SHANK3Q9BYB0 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
SHANK3Q9BYB0 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC22.58■■□□□ 1.2
SHANK3Q9BYB0 AC046185.3-201ENST00000623228 1824 ntBASIC22.58■■□□□ 1.2
SHANK3Q9BYB0 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SHANK3Q9BYB0 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC22.58■■□□□ 1.2
SHANK3Q9BYB0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 INO80C-206ENST00000586489 594 ntTSL 3 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 TAF8-206ENST00000472818 719 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 AC026120.1-201ENST00000611536 926 ntBASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC22.57■■□□□ 1.2
SHANK3Q9BYB0 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 VPS29-207ENST00000549970 818 ntTSL 3 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 DUX4L17-201ENST00000557360 1267 ntBASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 AF228730.6-201ENST00000641497 218 ntBASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 AC084121.3-201ENST00000641716 218 ntBASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 AC105233.6-201ENST00000642093 218 ntBASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 REXO1L9P-201ENST00000604264 2108 ntBASIC22.56■■□□□ 1.2
SHANK3Q9BYB0 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 METTL26-204ENST00000397665 558 ntTSL 2 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC22.55■■□□□ 1.2
SHANK3Q9BYB0 AC092474.2-201ENST00000424288 719 ntBASIC22.55■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms