Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PTCHD1Q96NR3 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PTCHD1Q96NR3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
PTCHD1Q96NR3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.26
PTCHD1Q96NR3 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 TPM4P1-201ENST00000436100 807 ntBASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 DDX43P3-201ENST00000441064 443 ntBASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 AC132008.2-207ENST00000454517 770 ntBASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 RN7SL510P-201ENST00000581311 263 ntBASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PTCHD1Q96NR3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 COX5BP2-201ENST00000392354 334 ntBASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PTCHD1Q96NR3 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms