Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 WASH6P-202ENST00000359512 1437 ntBASIC17.68■□□□□ 0.42
TTC28Q96AY4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.68■□□□□ 0.42
TTC28Q96AY4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TTC28Q96AY4 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 MIR663B-201ENST00000408361 115 ntBASIC17.67■□□□□ 0.42
TTC28Q96AY4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 MIR1908-201ENST00000410394 80 ntBASIC17.67■□□□□ 0.42
TTC28Q96AY4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SPDYE12P-201ENST00000618416 771 ntBASIC17.67■□□□□ 0.42
TTC28Q96AY4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TTC28Q96AY4 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.67■□□□□ 0.42
TTC28Q96AY4 BTBD7P1-201ENST00000447253 1453 ntBASIC17.67■□□□□ 0.42
TTC28Q96AY4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 TCF3P1-201ENST00000423021 1937 ntBASIC17.66■□□□□ 0.42
TTC28Q96AY4 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 AC011495.1-201ENST00000498085 584 ntBASIC17.66■□□□□ 0.42
TTC28Q96AY4 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 AC106872.11-201ENST00000605838 421 ntBASIC17.66■□□□□ 0.42
TTC28Q96AY4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TTC28Q96AY4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
TTC28Q96AY4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 APOC3-202ENST00000375345 604 ntTSL 5 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 GOLGA2P4-201ENST00000441462 777 ntBASIC17.65■□□□□ 0.42
TTC28Q96AY4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 AC100803.2-201ENST00000562459 1963 ntBASIC17.65■□□□□ 0.42
TTC28Q96AY4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 AL023806.1-201ENST00000603994 1649 ntBASIC17.65■□□□□ 0.42
TTC28Q96AY4 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TTC28Q96AY4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
TTC28Q96AY4 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms