Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC093458.2-201ENST00000623150 629 ntBASIC19.54■□□□□ 0.72
HPS3Q969F9 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.54■□□□□ 0.72
HPS3Q969F9 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
HPS3Q969F9 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
HPS3Q969F9 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
HPS3Q969F9 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HPS3Q969F9 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.53■□□□□ 0.72
HPS3Q969F9 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC19.53■□□□□ 0.72
HPS3Q969F9 DRAXINP1-201ENST00000437611 948 ntBASIC19.53■□□□□ 0.72
HPS3Q969F9 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.53■□□□□ 0.72
HPS3Q969F9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.53■□□□□ 0.72
HPS3Q969F9 AC069148.1-201ENST00000608741 768 ntBASIC19.53■□□□□ 0.72
HPS3Q969F9 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC19.53■□□□□ 0.72
HPS3Q969F9 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
HPS3Q969F9 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
HPS3Q969F9 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.53■□□□□ 0.72
HPS3Q969F9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
HPS3Q969F9 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
HPS3Q969F9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.53■□□□□ 0.72
HPS3Q969F9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS3Q969F9 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS3Q969F9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 AC005104.2-201ENST00000427818 678 ntBASIC19.52■□□□□ 0.72
HPS3Q969F9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.52■□□□□ 0.72
HPS3Q969F9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 ABR-217ENST00000572441 563 ntTSL 4 BASIC19.52■□□□□ 0.72
HPS3Q969F9 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.52■□□□□ 0.72
HPS3Q969F9 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
HPS3Q969F9 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 AC019129.2-201ENST00000609837 1235 ntBASIC19.52■□□□□ 0.72
HPS3Q969F9 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HPS3Q969F9 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.52■□□□□ 0.72
HPS3Q969F9 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
HPS3Q969F9 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
HPS3Q969F9 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
HPS3Q969F9 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC19.51■□□□□ 0.71
HPS3Q969F9 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.51■□□□□ 0.71
HPS3Q969F9 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.51■□□□□ 0.71
HPS3Q969F9 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.51■□□□□ 0.71
HPS3Q969F9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.51■□□□□ 0.71
HPS3Q969F9 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
HPS3Q969F9 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.51■□□□□ 0.71
HPS3Q969F9 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
HPS3Q969F9 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.51■□□□□ 0.71
HPS3Q969F9 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 AC091076.1-201ENST00000610741 619 ntBASIC19.51■□□□□ 0.71
HPS3Q969F9 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC19.51■□□□□ 0.71
HPS3Q969F9 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
HPS3Q969F9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
HPS3Q969F9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms