Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 AC055717.3-201ENST00000622967 595 ntBASIC17.14■□□□□ 0.33
LMX1AQ8TE12 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 AL138781.2-201ENST00000617896 1843 ntBASIC17.14■□□□□ 0.33
LMX1AQ8TE12 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 RPSAP43-201ENST00000402237 625 ntBASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 DNAJB3-201ENST00000446806 729 ntBASIC17.13■□□□□ 0.33
LMX1AQ8TE12 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 AC002347.1-201ENST00000569543 541 ntBASIC17.13■□□□□ 0.33
LMX1AQ8TE12 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 STK25P1-201ENST00000585406 838 ntBASIC17.13■□□□□ 0.33
LMX1AQ8TE12 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LMX1AQ8TE12 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 GPX1P2-201ENST00000429271 606 ntBASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 MIR4751-201ENST00000578027 74 ntBASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LMX1AQ8TE12 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms