Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 MTCL1P1-201ENST00000446207 792 ntBASIC18.51■□□□□ 0.55
RNF43Q68DV7 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.51■□□□□ 0.55
RNF43Q68DV7 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RNF43Q68DV7 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AC093677.2-201ENST00000600169 1863 ntBASIC18.5■□□□□ 0.55
RNF43Q68DV7 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 KRT16P4-201ENST00000453883 522 ntBASIC18.5■□□□□ 0.55
RNF43Q68DV7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AL138831.2-201ENST00000606564 490 ntBASIC18.5■□□□□ 0.55
RNF43Q68DV7 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.5■□□□□ 0.55
RNF43Q68DV7 AC108860.2-201ENST00000562760 2183 ntBASIC18.49■□□□□ 0.55
RNF43Q68DV7 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 POM121L3P-201ENST00000419331 1163 ntBASIC18.49■□□□□ 0.55
RNF43Q68DV7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 IGHV3OR16-7-201ENST00000604106 360 ntBASIC18.49■□□□□ 0.55
RNF43Q68DV7 AF228730.7-201ENST00000641842 219 ntBASIC18.49■□□□□ 0.55
RNF43Q68DV7 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RNF43Q68DV7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.49■□□□□ 0.55
RNF43Q68DV7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
RNF43Q68DV7 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
RNF43Q68DV7 PHGDH-209ENST00000641074 1780 ntBASIC18.48■□□□□ 0.55
RNF43Q68DV7 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.48■□□□□ 0.55
RNF43Q68DV7 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms