Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 AC004967.1-201ENST00000453589 447 ntBASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 AL353135.1-201ENST00000606729 504 ntBASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SHROOM1Q2M3G4 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC116407.2-201ENST00000613639 860 ntBASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
SHROOM1Q2M3G4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 CRYGEP-201ENST00000412192 528 ntBASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 AC138028.4-201ENST00000564984 1845 ntBASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 FLJ13224-201ENST00000313737 1514 ntBASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SHROOM1Q2M3G4 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
SHROOM1Q2M3G4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms