Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 AL139099.5-201ENST00000635274 300 ntBASIC10.79□□□□□ -0.68
HSPG2P98160 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 HARS-201ENST00000307633 1780 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC10.79□□□□□ -0.68
HSPG2P98160 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC10.79□□□□□ -0.68
HSPG2P98160 THTPA-204ENST00000554970 569 ntTSL 4 BASIC10.79□□□□□ -0.68
HSPG2P98160 THTPA-206ENST00000556015 535 ntTSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 WNT11-204ENST00000621122 789 ntTSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
HSPG2P98160 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC10.79□□□□□ -0.68
HSPG2P98160 ORC6-206ENST00000568364 888 ntTSL 5 BASIC10.79□□□□□ -0.68
HSPG2P98160 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
HSPG2P98160 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC10.78□□□□□ -0.68
HSPG2P98160 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 REXO1L6P-201ENST00000603433 1515 ntBASIC10.78□□□□□ -0.68
HSPG2P98160 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 MPV17-208ENST00000405076 603 ntTSL 5 BASIC10.78□□□□□ -0.68
HSPG2P98160 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 BCYRN1-201ENST00000418539 200 ntBASIC10.78□□□□□ -0.68
HSPG2P98160 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 AC109635.5-201ENST00000533593 962 ntBASIC10.78□□□□□ -0.68
HSPG2P98160 AC009118.2-201ENST00000613275 655 ntBASIC10.78□□□□□ -0.68
HSPG2P98160 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC10.78□□□□□ -0.68
HSPG2P98160 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
HSPG2P98160 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC10.78□□□□□ -0.68
HSPG2P98160 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
HSPG2P98160 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 AC241585.1-201ENST00000433527 519 ntBASIC10.78□□□□□ -0.68
HSPG2P98160 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC10.78□□□□□ -0.68
HSPG2P98160 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC10.78□□□□□ -0.68
HSPG2P98160 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC10.78□□□□□ -0.68
HSPG2P98160 MMP17-203ENST00000535004 719 ntTSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC10.78□□□□□ -0.68
HSPG2P98160 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
HSPG2P98160 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC10.78□□□□□ -0.68
HSPG2P98160 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
HSPG2P98160 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC10.77□□□□□ -0.68
HSPG2P98160 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC10.77□□□□□ -0.68
HSPG2P98160 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
HSPG2P98160 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 AC007541.1-201ENST00000570282 1469 ntBASIC10.77□□□□□ -0.68
HSPG2P98160 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
HSPG2P98160 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
HSPG2P98160 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC10.77□□□□□ -0.68
HSPG2P98160 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC10.77□□□□□ -0.68
HSPG2P98160 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC10.77□□□□□ -0.68
HSPG2P98160 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC10.77□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms