Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
RNF4P78317 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
RNF4P78317 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 MTDHP3-201ENST00000594186 672 ntBASIC16.34■□□□□ 0.21
RNF4P78317 AL121912.1-201ENST00000603683 238 ntBASIC16.34■□□□□ 0.21
RNF4P78317 AC008608.2-201ENST00000606089 416 ntBASIC16.34■□□□□ 0.21
RNF4P78317 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 AL355877.3-201ENST00000622820 899 ntBASIC16.34■□□□□ 0.21
RNF4P78317 AD001527.2-201ENST00000622994 785 ntBASIC16.34■□□□□ 0.21
RNF4P78317 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 AP000867.4-201ENST00000641616 219 ntBASIC16.34■□□□□ 0.21
RNF4P78317 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
RNF4P78317 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 AC012317.2-201ENST00000623305 2251 ntBASIC16.34■□□□□ 0.21
RNF4P78317 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.34■□□□□ 0.21
RNF4P78317 AC006116.8-202ENST00000587620 1550 ntBASIC16.34■□□□□ 0.21
RNF4P78317 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
RNF4P78317 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
RNF4P78317 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
RNF4P78317 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.33■□□□□ 0.21
RNF4P78317 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF4P78317 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 AC079781.3-201ENST00000449110 356 ntBASIC16.33■□□□□ 0.2
RNF4P78317 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.33■□□□□ 0.2
RNF4P78317 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.33■□□□□ 0.2
RNF4P78317 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 AL031008.1-201ENST00000619963 541 ntBASIC16.33■□□□□ 0.2
RNF4P78317 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 AC011270.2-201ENST00000624293 2550 ntBASIC16.33■□□□□ 0.2
RNF4P78317 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
RNF4P78317 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
RNF4P78317 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
RNF4P78317 AL049757.1-201ENST00000616842 1596 ntBASIC16.33■□□□□ 0.2
RNF4P78317 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF4P78317 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
RNF4P78317 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF4P78317 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 AC008764.6-201ENST00000595909 2069 ntBASIC16.33■□□□□ 0.2
RNF4P78317 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.33■□□□□ 0.2
RNF4P78317 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
RNF4P78317 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RNF4P78317 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
RNF4P78317 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
RNF4P78317 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.32■□□□□ 0.2
RNF4P78317 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
RNF4P78317 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.32■□□□□ 0.2
RNF4P78317 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.32■□□□□ 0.2
RNF4P78317 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.32■□□□□ 0.2
RNF4P78317 PMPCAP1-201ENST00000508114 1576 ntBASIC16.32■□□□□ 0.2
RNF4P78317 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.32■□□□□ 0.2
RNF4P78317 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
RNF4P78317 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
RNF4P78317 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
RNF4P78317 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.32■□□□□ 0.2
RNF4P78317 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.32■□□□□ 0.2
RNF4P78317 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.32■□□□□ 0.2
RNF4P78317 AC019129.2-201ENST00000609837 1235 ntBASIC16.32■□□□□ 0.2
RNF4P78317 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RNF4P78317 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
RNF4P78317 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.31■□□□□ 0.2
RNF4P78317 AL353593.2-201ENST00000602529 1483 ntBASIC16.31■□□□□ 0.2
RNF4P78317 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
RNF4P78317 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RNF4P78317 KRT8P10-201ENST00000450021 1447 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms