Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 RNF121-214ENST00000533380 870 ntTSL 3 BASIC12.5□□□□□ -0.41
RPL39P62891 LINC01451-201ENST00000623792 534 ntBASIC12.5□□□□□ -0.41
RPL39P62891 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
RPL39P62891 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RPL39P62891 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RPL39P62891 AL162727.3-201ENST00000635661 2787 ntBASIC12.49□□□□□ -0.41
RPL39P62891 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
RPL39P62891 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 OS9-205ENST00000413095 1660 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 ESRRAP1-201ENST00000400596 1257 ntBASIC12.49□□□□□ -0.41
RPL39P62891 APTR-205ENST00000447009 902 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 CA15P1-201ENST00000481698 905 ntBASIC12.49□□□□□ -0.41
RPL39P62891 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC12.49□□□□□ -0.41
RPL39P62891 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.49□□□□□ -0.41
RPL39P62891 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
RPL39P62891 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC12.49□□□□□ -0.41
RPL39P62891 LTF-203ENST00000426532 2494 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC12.49□□□□□ -0.41
RPL39P62891 AC005915.1-201ENST00000624912 2018 ntBASIC12.49□□□□□ -0.41
RPL39P62891 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
RPL39P62891 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 FUK-207ENST00000571514 3054 ntTSL 2 BASIC12.48□□□□□ -0.41
RPL39P62891 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
RPL39P62891 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC12.48□□□□□ -0.41
RPL39P62891 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
RPL39P62891 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
RPL39P62891 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
RPL39P62891 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
RPL39P62891 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms