Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 HIST2H3DP1-201ENST00000401004 416 ntBASIC23.06■■□□□ 1.28
RIPK4P57078 SPDYE21P-201ENST00000413323 827 ntBASIC23.06■■□□□ 1.28
RIPK4P57078 BX005266.1-201ENST00000473402 457 ntBASIC23.06■■□□□ 1.28
RIPK4P57078 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 AC021087.4-201ENST00000563761 564 ntBASIC23.06■■□□□ 1.28
RIPK4P57078 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.06■■□□□ 1.28
RIPK4P57078 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.06■■□□□ 1.28
RIPK4P57078 LINC01451-201ENST00000623792 534 ntBASIC23.06■■□□□ 1.28
RIPK4P57078 AC073592.4-201ENST00000623827 446 ntBASIC23.06■■□□□ 1.28
RIPK4P57078 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC23.06■■□□□ 1.28
RIPK4P57078 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
RIPK4P57078 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
RIPK4P57078 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
RIPK4P57078 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
RIPK4P57078 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC23.06■■□□□ 1.28
RIPK4P57078 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC23.06■■□□□ 1.28
RIPK4P57078 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
RIPK4P57078 AC148477.5-201ENST00000625164 1645 ntBASIC23.05■■□□□ 1.28
RIPK4P57078 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 SCARNA2-201ENST00000458748 420 ntBASIC23.05■■□□□ 1.28
RIPK4P57078 RNPS1P1-201ENST00000507437 918 ntBASIC23.05■■□□□ 1.28
RIPK4P57078 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
RIPK4P57078 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.05■■□□□ 1.28
RIPK4P57078 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC23.05■■□□□ 1.28
RIPK4P57078 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC23.05■■□□□ 1.28
RIPK4P57078 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
RIPK4P57078 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC23.05■■□□□ 1.28
RIPK4P57078 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
RIPK4P57078 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
RIPK4P57078 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RIPK4P57078 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
RIPK4P57078 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC23.04■■□□□ 1.28
RIPK4P57078 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
RIPK4P57078 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RIPK4P57078 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RIPK4P57078 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC23.04■■□□□ 1.28
RIPK4P57078 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC23.04■■□□□ 1.28
RIPK4P57078 AL139288.1-201ENST00000623748 933 ntBASIC23.04■■□□□ 1.28
RIPK4P57078 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RIPK4P57078 SIGLEC16-201ENST00000599858 1437 ntBASIC23.04■■□□□ 1.28
RIPK4P57078 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
RIPK4P57078 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC23.04■■□□□ 1.28
RIPK4P57078 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
RIPK4P57078 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
RIPK4P57078 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
RIPK4P57078 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
RIPK4P57078 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
RIPK4P57078 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 HNRNPDP1-201ENST00000439535 754 ntBASIC23.03■■□□□ 1.28
RIPK4P57078 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
RIPK4P57078 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC23.03■■□□□ 1.28
RIPK4P57078 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC23.03■■□□□ 1.28
RIPK4P57078 COX5A-202ENST00000562233 441 ntTSL 3 BASIC23.03■■□□□ 1.28
RIPK4P57078 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC23.03■■□□□ 1.28
RIPK4P57078 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
RIPK4P57078 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC23.03■■□□□ 1.28
RIPK4P57078 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RIPK4P57078 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms