Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 AP001094.4-201ENST00000579008 2176 ntBASIC18.59■□□□□ 0.57
LIG3P49916 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LIG3P49916 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
LIG3P49916 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.59■□□□□ 0.57
LIG3P49916 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LIG3P49916 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
LIG3P49916 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.59■□□□□ 0.57
LIG3P49916 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
LIG3P49916 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
LIG3P49916 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
LIG3P49916 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.58■□□□□ 0.57
LIG3P49916 AC138028.4-201ENST00000564984 1845 ntBASIC18.58■□□□□ 0.57
LIG3P49916 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 FLJ38576-201ENST00000623820 2459 ntBASIC18.58■□□□□ 0.57
LIG3P49916 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.58■□□□□ 0.57
LIG3P49916 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
LIG3P49916 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.58■□□□□ 0.57
LIG3P49916 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.58■□□□□ 0.56
LIG3P49916 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.58■□□□□ 0.56
LIG3P49916 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.58■□□□□ 0.56
LIG3P49916 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC18.58■□□□□ 0.56
LIG3P49916 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.58■□□□□ 0.56
LIG3P49916 AC104390.1-201ENST00000555663 520 ntBASIC18.58■□□□□ 0.56
LIG3P49916 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.58■□□□□ 0.56
LIG3P49916 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.58■□□□□ 0.56
LIG3P49916 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
LIG3P49916 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
LIG3P49916 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC18.58■□□□□ 0.56
LIG3P49916 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
LIG3P49916 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.57■□□□□ 0.56
LIG3P49916 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
LIG3P49916 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.57■□□□□ 0.56
LIG3P49916 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
LIG3P49916 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC18.57■□□□□ 0.56
LIG3P49916 MIR3917-201ENST00000580971 93 ntBASIC18.57■□□□□ 0.56
LIG3P49916 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
LIG3P49916 HYMAI.1-201ENST00000620949 238 ntBASIC18.57■□□□□ 0.56
LIG3P49916 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC18.57■□□□□ 0.56
LIG3P49916 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC18.57■□□□□ 0.56
LIG3P49916 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
LIG3P49916 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
LIG3P49916 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 LINC01311-201ENST00000565162 1445 ntBASIC18.57■□□□□ 0.56
LIG3P49916 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
LIG3P49916 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
LIG3P49916 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
LIG3P49916 AC103702.1-201ENST00000548801 2630 ntBASIC18.56■□□□□ 0.56
LIG3P49916 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
LIG3P49916 FUK-207ENST00000571514 3054 ntTSL 2 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms