Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.13■□□□□ 0.33
HNF4AP41235 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 AC139713.2-201ENST00000641328 2723 ntBASIC17.13■□□□□ 0.33
HNF4AP41235 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 AC012313.1-201ENST00000593393 3059 ntBASIC17.13■□□□□ 0.33
HNF4AP41235 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
HNF4AP41235 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HNF4AP41235 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.13■□□□□ 0.33
HNF4AP41235 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.13■□□□□ 0.33
HNF4AP41235 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 AL121672.3-201ENST00000608644 468 ntBASIC17.13■□□□□ 0.33
HNF4AP41235 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HNF4AP41235 AC093458.2-201ENST00000623150 629 ntBASIC17.13■□□□□ 0.33
HNF4AP41235 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.13■□□□□ 0.33
HNF4AP41235 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.13■□□□□ 0.33
HNF4AP41235 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HNF4AP41235 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 AC016734.2-201ENST00000624325 1377 ntBASIC17.13■□□□□ 0.33
HNF4AP41235 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.13■□□□□ 0.33
HNF4AP41235 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HNF4AP41235 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HNF4AP41235 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HNF4AP41235 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.12■□□□□ 0.33
HNF4AP41235 REXO1L11P-201ENST00000620964 1927 ntBASIC17.12■□□□□ 0.33
HNF4AP41235 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.12■□□□□ 0.33
HNF4AP41235 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HNF4AP41235 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HNF4AP41235 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.12■□□□□ 0.33
HNF4AP41235 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.12■□□□□ 0.33
HNF4AP41235 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.12■□□□□ 0.33
HNF4AP41235 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 AC091076.1-201ENST00000610741 619 ntBASIC17.12■□□□□ 0.33
HNF4AP41235 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC17.12■□□□□ 0.33
HNF4AP41235 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
HNF4AP41235 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.12■□□□□ 0.33
HNF4AP41235 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HNF4AP41235 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.11■□□□□ 0.33
HNF4AP41235 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.11■□□□□ 0.33
HNF4AP41235 AC096633.1-201ENST00000422446 749 ntBASIC17.11■□□□□ 0.33
HNF4AP41235 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.11■□□□□ 0.33
HNF4AP41235 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.11■□□□□ 0.33
HNF4AP41235 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.11■□□□□ 0.33
HNF4AP41235 AC097374.2-201ENST00000618617 1306 ntBASIC17.11■□□□□ 0.33
HNF4AP41235 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HNF4AP41235 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
HNF4AP41235 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
HNF4AP41235 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.11■□□□□ 0.33
HNF4AP41235 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.11■□□□□ 0.33
HNF4AP41235 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.11■□□□□ 0.33
HNF4AP41235 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HNF4AP41235 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HNF4AP41235 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms