Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 WBP2-203ENST00000433525 928 ntTSL 2 BASIC22■■□□□ 1.11
COL5A3P25940 RN7SL589P-201ENST00000481268 310 ntBASIC22■■□□□ 1.11
COL5A3P25940 NMU-203ENST00000507338 658 ntTSL 3 BASIC22■■□□□ 1.11
COL5A3P25940 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC22■■□□□ 1.11
COL5A3P25940 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC22■■□□□ 1.11
COL5A3P25940 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
COL5A3P25940 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC21.99■■□□□ 1.11
COL5A3P25940 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.99■■□□□ 1.11
COL5A3P25940 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
COL5A3P25940 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.99■■□□□ 1.11
COL5A3P25940 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.99■■□□□ 1.11
COL5A3P25940 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
COL5A3P25940 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.99■■□□□ 1.11
COL5A3P25940 AC069335.1-201ENST00000489972 472 ntBASIC21.99■■□□□ 1.11
COL5A3P25940 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.99■■□□□ 1.11
COL5A3P25940 YTHDF3-AS1-201ENST00000603538 718 ntBASIC21.99■■□□□ 1.11
COL5A3P25940 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
COL5A3P25940 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC21.98■■□□□ 1.11
COL5A3P25940 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.98■■□□□ 1.11
COL5A3P25940 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
COL5A3P25940 FAM185BP-201ENST00000443595 716 ntBASIC21.98■■□□□ 1.11
COL5A3P25940 AC087641.1-201ENST00000557561 1021 ntBASIC21.98■■□□□ 1.11
COL5A3P25940 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.98■■□□□ 1.11
COL5A3P25940 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
COL5A3P25940 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.98■■□□□ 1.11
COL5A3P25940 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
COL5A3P25940 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC21.98■■□□□ 1.11
COL5A3P25940 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
COL5A3P25940 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.98■■□□□ 1.11
COL5A3P25940 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.97■■□□□ 1.11
COL5A3P25940 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
COL5A3P25940 FAM58DP-201ENST00000428076 619 ntBASIC21.97■■□□□ 1.11
COL5A3P25940 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
COL5A3P25940 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.97■■□□□ 1.11
COL5A3P25940 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.97■■□□□ 1.11
COL5A3P25940 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 RARRES2P8-201ENST00000566335 367 ntBASIC21.97■■□□□ 1.11
COL5A3P25940 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.97■■□□□ 1.11
COL5A3P25940 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.97■■□□□ 1.11
COL5A3P25940 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
COL5A3P25940 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A3P25940 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.97■■□□□ 1.11
COL5A3P25940 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.97■■□□□ 1.11
COL5A3P25940 MMP17-203ENST00000535004 719 ntTSL 3 BASIC21.97■■□□□ 1.11
COL5A3P25940 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC21.97■■□□□ 1.11
COL5A3P25940 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
COL5A3P25940 HLA-DQB1-201ENST00000374943 1656 ntBASIC21.96■■□□□ 1.11
COL5A3P25940 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
COL5A3P25940 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 AC002056.1-201ENST00000395613 760 ntBASIC21.96■■□□□ 1.11
COL5A3P25940 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.96■■□□□ 1.11
COL5A3P25940 AC079140.1-201ENST00000508039 487 ntBASIC21.96■■□□□ 1.11
COL5A3P25940 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC21.96■■□□□ 1.11
COL5A3P25940 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.96■■□□□ 1.11
COL5A3P25940 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
COL5A3P25940 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC21.96■■□□□ 1.11
COL5A3P25940 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.95■■□□□ 1.1
COL5A3P25940 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.95■■□□□ 1.1
COL5A3P25940 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC21.95■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms